Hi Bruce, Thank you for your reply.
The aseg seems to be okay: https://www.dropbox.com/s/j1ac0ftxw8iiv34/Putamen.png?dl=0 <https://www.dropbox.com/s/j1ac0ftxw8iiv34/Putamen.png?dl=0> Do you have any other suggestions? Here is an extra image of the cortical ribbon. Maybe this helps: https://www.dropbox.com/s/ycav96v91e4ncbg/Cortex.png?dl=0 <https://www.dropbox.com/s/ycav96v91e4ncbg/Cortex.png?dl=0> Thanks! - Vincent On Mon, 03 Jul 2017, Bruce Fischl wrote: Hi Vincent the putamen error probably means that the aseg is wrong, and if so, you can correct the aseg and rerun autorecon2-wm and autorecon3 I believe. For the medial ttemporal lobe issue is that really cortex? I can't really tell from the single coronal slice. I'll cc Jean Augustinack to see if she has an opinion. cheers Bruce On Fri, 30 Jun 2017, Vincent Koppelmans wrote: Hi all, I was wondering how to fix the following issues: 1) The cortical ribbon extends into the gray matter of the putamen (see the top row of the attached image). 2) Cortical gray matter is missing in the medial temporal lobes (see the bottom row of the attached image). I can’t find solutions for these particular issues under https://surfer.nmr.mgh.harvard.edu/fswiki/Edits <https://surfer.nmr.mgh.harvard.edu/fswiki/Edits> <https://surfer.nmr.mgh.harvard.edu/fswiki/Edits <https://surfer.nmr.mgh.harvard.edu/fswiki/Edits>> How should I approach this? Suggestions are very much welcome. Thank you! - Vincent
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
