Hi Bruce this is the command i am attempting to run but having no luck as yet. Any help would be greatly appreciated.
bash-4.1$ freeview -f \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 > \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:overlay=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 > \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:visible=0 > \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.white:visible=0 \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial \ > --viewport 3d bash: freeview: command not found bash-4.1$ Kind regards, Michael University of Birmingham ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: 14 June 2017 18:46:00 To: Freesurfer support list Subject: Re: [Freesurfer] viewing surfaces in 3D using freeview Hi Michael can you send us the full command line and screen output of any command that you ran that fails and you want our help with? thanks Bruce On Wed, 14 Jun 2017, Michael Davies wrote: > > Hi, the server has been down and i currently cannot access my account. I did > however try putting freeview -f at the beginning before without any luck but > i will try again when possible. > > > Kind regards, Michael > > ____________________________________________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Ruopeng Wang > <rpw...@nmr.mgh.harvard.edu> > Sent: 14 June 2017 15:54:15 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] viewing surfaces in 3D using freeview > You didn't call freeview there... Try adding "freeview -f " at the beginning > of the command. > > On 06/14/2017 11:02 AM, Michael Davies wrote: > Hi Ruopeng, this is the command i ran and resulting error > message; > > bash-4.1$/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=apar > c.annot:name=pial_aparc:visible=0 \ > >/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:overla > y=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 > \ > >projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:visible > =0 \ > >/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.white:visible=0 > \ > > projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial \ > > --viewport 3d > bash:/projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=apar > c.annot:name=pial_aparc:visible=0: No such file or directory > > > Kind regards, Michael > > On 14 Jun 2017, at 15:05, Ruopeng Wang > <rpw...@nmr.mgh.harvard.edu> wrote: > > Please copy and paste the full command line you ran and the > error message you got. > > Thanks, > Ruopeng > > On Jun 14, 2017, at 9:26 AM, Michael Davies > <michael.davie...@hotmail.com> wrote: > > Hello i am trying to access the data files in 3D but i am > having problems opening the files using the command syntax > given on the website. > I have set my own pathway using my own data; > > “/projects/pbic1030/Micahel/subjects/Subj1/fsaverage/surf/” > > However, one i progress with the code past this point i am > unable to load the data and get the error message No file > or directory in the terminal even though this is the > correct pathway to the data. > > When i enter the rest as follows this is when the problems > begin to > occur lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 > \ > > Could you please advise me how to proceed? > > Kind regards, Michael > University of Birmingham > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > >
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