Hi Ruopeng, this is the command i ran and resulting error message; bash-4.1$ /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:overlay=lh.thickness:overlay_threshold=0.1,3::name=inflated_thickness:visible=0 > \ > projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.inflated:visible=0 > \ > /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.white:visible=0 \ > projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial \ > --viewport 3d bash: /projects/pbic1030/Michael/subjects/Subj1/fsaverage/surf/lh.pial:annot=aparc.annot:name=pial_aparc:visible=0: No such file or directory
Kind regards, Michael On 14 Jun 2017, at 15:05, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu> wrote: Please copy and paste the full command line you ran and the error message you got. Thanks, Ruopeng On Jun 14, 2017, at 9:26 AM, Michael Davies <michael.davie...@hotmail.com<mailto:michael.davie...@hotmail.com>> wrote: Hello i am trying to access the data files in 3D but i am having problems opening the files using the command syntax given on the website. I have set my own pathway using my own data; “/projects/pbic1030/Micahel/subjects/Subj1/fsaverage/surf/” However, one i progress with the code past this point i am unable to load the data and get the error message No file or directory in the terminal even though this is the correct pathway to the data. When i enter the rest as follows this is when the problems begin to occur lh.pial:annot=aparc.annot:name=pial_aparc:visible=0 \ Could you please advise me how to proceed? Kind regards, Michael University of Birmingham _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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