In the log file the error was:
ERROR: MultiRegistration::loadMovables: images have different voxel sizes.
Currently not supported, maybe first make conform?
Debug info: size(1) = 1, 1, 1 size(0) = 0.7, 0.7, 0.8
Currently not supported, maybe first make conform?
Debug info: size(1) = 1, 1, 1 size(0) = 0.7, 0.7, 0.8
MultiRegistration::loadMovables: voxel size is different /recons/subj1/mri/orig/002.mgz.
Jon
Sent: Sunday, June 11, 2017 at 2:12 PM
From: "Matt Glasser" <m...@ma-tea.com>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] difference in T1 and T2 resolution
From: "Matt Glasser" <m...@ma-tea.com>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] difference in T1 and T2 resolution
What was the error message?
Peace,
Matt.
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of John Anderson <j.ander...@publicist.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, June 11, 2017 at 9:06 AM
To: <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] difference in T1 and T2 resolution
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, June 11, 2017 at 9:06 AM
To: <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] difference in T1 and T2 resolution
Dear Freesurfer experts,
I have T1 and T2 images were unfortunately acquired with different resolution (i.e the voxel sizes is not the same)
T1 is 280X280X208
T2 is 270X270X200
I tried to run "recon-all" but it failed to process the data. The command that I used is :
pbsubmit -c " recon-all -subjid subj1 -T2 PATH_TO_/T2.nii.gz -qcache -T2pial -all"
How can I analyze these images? Is it a correct procedure to conform the voxels using "mri_convert". Is this procedure correct? does it hurt the anatomy of the images?
I highly appreciate your help
John
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