Hello FreeSurfer Developers,
I'm attempting to compute hippocampal subfield segmentation.
Unfortunatelty I found following errors.
------------------------------------------------------------------------
Segmentation violation detected at Sat May 20 10:45:37 2017
------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled
Current Visual : None
Default Encoding: ISO-8859-1
MATLAB Root : /Applications/freesurfer/MCRv80
MATLAB Version : 8.0.0.783 (R2012b)
Operating System: Darwin 16.5.0 Darwin Kernel Version 16.5.0: Fri
Mar 3 16:52:33 PST 2017; root:xnu-3789.51.2~3/RELEASE_X86_64 x86_64
Processor ID : x86 Family 6 Model 58 Stepping 9, GenuineIntel
Window System : No active display
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 0000000103310000
RCX = 0000000000000006 RDX = 0000000103313a00
RSP = 000000010fc39e80 RBP = 000000d0ffffffff
RSI = ffffffffffffffff RDI = 0000000000000005
R8 = 0000000000000000 R9 = 0000000110323852
R10 = 0000700002d27480 R11 = 0000700002d274e0
R12 = 0000000000000005 R13 = 000000001c004121
R14 = 0000000000000246 R15 = 0000000110500160
RIP = 0000700002d27b98 RFL = 0000700002d27b60
CS = 000000010f91fd54 FS = 0000700002d27360 GS = 0000000000000005
Stack Trace (from fault):
[ 0] 0x0000000101e61e46
/Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00036422
_ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+000150
[ 1] 0x0000000101e62af1
/Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00039665
fl_diag_terminate+000321
[ 2] 0x0000000101e64c34
/Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+00048180
_ZN2fl4diag13terminate_logEPKcRKNS0_14thread_contextE+000100
[ 3] 0x0000000105ed825e
/Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00315998
mnTrapCtrlc+000254
[ 4] 0x0000000105ed9d24
/Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00322852
_Z32mnRunPathDependentInitializationv+003492
[ 5] 0x0000000105eda13d
/Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00323901
_Z32mnRunPathDependentInitializationv+004541
[ 6] 0x0000000105eda7f5
/Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00325621
_Z32mnRunPathDependentInitializationv+006261
[ 7] 0x0000000105eda945
/Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+00325957
mnFatalSignalHandler+000149
[ 8] 0x00007fffa5b60b3a
/usr/lib/system/libsystem_platform.dylib+00011066 _sigtramp+000026
[ 9] 0x00000004ffffffff
/usr/lib/system/libsystem_platform.dylib+18446603359210840063
If this problem is reproducible, please submit a Service Request via:
http://www.mathworks.com/support/contact_us/
A technical support engineer might contact you with further information.
Thank you for your help.** This crash report has been saved to disk as
/Users/mdmamunalamin/matlab_crash_dump.5756-1 **
MATLAB is exiting because of fatal error
/Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh:
line 38: 5756 Killed: 9
"${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
$a
I would like to draw your kind attention regarding this.
--
Kind regards
Md. Mamun Al-Amin
------------------------------
PhD Candidate, Queensland Brain Institute
Building 79, St Lucia QLD 4072
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