it depends on how many connections there are
On Fri, 19 May 2017, miracle
ozzoude wrote:
Hello Bruce, Is 2 or 3 slices ok? Also, after that I should run the rest of
recon-all stage from autorecon2.
Best,
Paul
On Fri, May 19, 2017 at 11:32 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
yes, or try rerunning watershed with different parameters. YOu
don't have to remove the entire skull that was left - just the
connection between it and wm
On Fri, 19 May 2017, miracle ozzoude wrote:
Hello Bruce, Yes, the skull is still attached.
Should I remove the skull for
all the slices and re-run it again?
Best,
Paul
On Fri, May 19, 2017 at 10:28 AM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Paul
you need to look at the rh.orig.nofix and
rh.inflated.nofix.
Typically something big is wrong like skull
attached to brain or
something
cheers
Bruce
On Fri, 19 May 2017, miracle ozzoude wrote:
Hello Freesurfer expert, While running
recon-all on
one of my subjects, the
pipeline got stuck during the "fix
topology rh"
stage for almost 12hrs. How
do I diagnosis the problem and fix it? I
have
attached the recon-all.log
file. Thank you
Best,
Paul
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