Hello Bruce, Yes, the skull is still attached. Should I remove the skull for all the slices and re-run it again? Best, Paul
On Fri, May 19, 2017 at 10:28 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Paul > > you need to look at the rh.orig.nofix and rh.inflated.nofix. Typically > something big is wrong like skull attached to brain or something > > cheers > Bruce > > > > On Fri, 19 May 2017, miracle ozzoude wrote: > > Hello Freesurfer expert, While running recon-all on one of my subjects, the >> pipeline got stuck during the "fix topology rh" stage for almost 12hrs. >> How >> do I diagnosis the problem and fix it? I have attached the recon-all.log >> file. Thank you >> Best, >> Paul >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
