________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Maria A Infante
[minfa...@ucsd.edu]
Sent: Friday, May 12, 2017 3:24 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] 2 stage model longitudinal data analysis
Hi,
I am interested in looking at groups differences (3 groups) in percent
thickness change. I want to use mri_glmfit to analyze but I am unclear on what
I should include on my fsgd file. Can you please provide an example?
Also The example provided on the fswiki under Option mri_glmfit doesn't call
for an fsgd file.
long_mris_slopes --qdec long.testretest.qdec \
--meas thickness \
--hemi lh \
--sd $SUBJECTS_DIR \
--do-pc1 --do-label \
--generic-time \
--fwhm 15 \
--qcache fsaverage \
--stack-pc1 lh.testretest.thickness-pc1.stack.mgh \
--isec-labels lh.testretest.fsaverage.cortex.label
mri_glmfit --osgm \
--glmdir lh.testretest.thickness-pc1.fwhm15 \
--y lh.testretest.thickness-pc1.stack.fwhm15.mgh \
--label lh.testretest.fsaverage.cortex.label \
--surf fsaverage lh
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
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