depends on your analysis but probably so
On 04/06/2017 05:26 PM, std...@virgilio.it wrote: > Thanks. > The file could not be open by fslview. > I presume that it is inflated. > How can I do to transform it? > Stefano > > ----Messaggio originale---- > Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> > Data: 6-apr-2017 17.56 > A: <freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] R: R: Re: R: Re: Whole preprocessing with > FAST without to perform a seed based analysis > > It will be in the space that you analyzed it in. If you want the > native space, then use -native when running preproc-sess and > mkanalysis > > > On 4/6/17 2:34 AM, std...@virgilio.it wrote: >> Furthermore, the res-001.nii which is produce in produced in the >> res folder in not the same dimension of f.nii. >> I would do the whole FAST preprocessing on f.nii., maintaining >> the same dimension and open it with FSL. >> Thanks >> Stefano >> >> ----Messaggio originale---- >> Da: std...@virgilio.it >> Data: 5-apr-2017 23.39 >> A: "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> >> Ogg: [Freesurfer] R: Re: R: Re: Whole preprocessing with FAST >> without to perform a seed based analysis >> >> Hi, >> >> as you advise I have run selxavg3-sess with the -svres option. >> I found a folder called "res" which contain "res-001.nii". Is >> it the f.nii fully processed? >> Thanks >> Stefano >> >> ----Messaggio originale---- >> Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> >> Data: 14-mar-2017 17.38 >> A: <freesurfer@nmr.mgh.harvard.edu> >> Ogg: Re: [Freesurfer] R: Re: Whole preprocessing with >> FAST without to perform a seed based analysis >> >> You can't on either occasion just using preproc-sess. >> You can create an analysis with those components, then >> run selxavg3-sess with the -svres option. This will >> create a folder called eres with volumes that have had >> all the nuisance variables and low freqeuncies regressed out >> >> >> On 3/14/17 12:32 PM, std...@virgilio.it wrote: >>> Thanks. >>> 1- By using only preproc-sess, how can I perform "band >>> pass filtering"? >>> 2- And how can I take in account the nuisance variables: >>> the CSF from which the top 5 principle components, the >>> white matter from which the top 5 principle components, >>> motion correction parameters (-mcextreg), 5th order >>> polynomial. How can I eliminate the first 4 time points? >>> Regards >>> Stefano >>> >>> ----Messaggio originale---- >>> Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> >>> Data: 14-mar-2017 16.14 >>> A: <freesurfer@nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] Whole preprocessing with FAST >>> without to perform a seed based analysis >>> >>> just use preproc-sess >>> >>> >>> On 3/14/17 10:45 AM, std...@virgilio.it wrote: >>>> Hi list, >>>> in FS-FAST, on rs-fMRI data, is possible to run >>>> selxavg3-sess without -a option? >>>> I would use whole the FS-FAST to preprocess my >>>> data. I would include the mkanalysis-sess step but >>>> I would not perform a seed-based analysis. >>>> Thanks >>>> Stefano >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
