It will be in the space that you analyzed it in. If you want the native
space, then use -native when running preproc-sess and mkanalysis
On 4/6/17 2:34 AM, std...@virgilio.it wrote:
Furthermore, the res-001.nii which is produce in produced in the res
folder in not the same dimension of f.nii.
I would do the whole FAST preprocessing on f.nii., maintaining the
same dimension and open it with FSL.
Thanks
Stefano
----Messaggio originale----
Da: std...@virgilio.it
Data: 5-apr-2017 23.39
A: "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu>
Ogg: [Freesurfer] R: Re: R: Re: Whole preprocessing with FAST
without to perform a seed based analysis
Hi,
as you advise I have run selxavg3-sess with the -svres option.
I found a folder called "res" which contain "res-001.nii". Is it
the f.nii fully processed?
Thanks
Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 17.38
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] R: Re: Whole preprocessing with FAST
without to perform a seed based analysis
You can't on either occasion just using preproc-sess. You can
create an analysis with those components, then run
selxavg3-sess with the -svres option. This will create a
folder called eres with volumes that have had all the nuisance
variables and low freqeuncies regressed out
On 3/14/17 12:32 PM, std...@virgilio.it wrote:
Thanks.
1- By using only preproc-sess, how can I perform "band pass
filtering"?
2- And how can I take in account the nuisance variables: the
CSF from which the top 5 principle components, the white
matter from which the top 5 principle components, motion
correction parameters (-mcextreg), 5th order polynomial. How
can I eliminate the first 4 time points?
Regards
Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 16.14
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] Whole preprocessing with FAST
without to perform a seed based analysis
just use preproc-sess
On 3/14/17 10:45 AM, std...@virgilio.it wrote:
Hi list,
in FS-FAST, on rs-fMRI data, is possible to run
selxavg3-sess without -a option?
I would use whole the FS-FAST to preprocess my data. I
would include the mkanalysis-sess step but I would not
perform a seed-based analysis.
Thanks
Stefano
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