Furthermore, the res-001.nii which is produce in produced in the res folder in
not the same dimension of f.nii.I would do the whole FAST preprocessing on
f.nii., maintaining the same dimension and open it with FSL.ThanksStefano
----Messaggio originale----
Da: std...@virgilio.it
Data: 5-apr-2017 23.39
A: "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu>
Ogg: [Freesurfer] R: Re: R: Re: Whole preprocessing with FAST without to
perform a seed based analysis
Hi,
as you advise I have run selxavg3-sess with the -svres option.I found a folder
called "res" which contain "res-001.nii". Is it the f.nii fully
processed?ThanksStefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 17.38
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] R: Re: Whole preprocessing with FAST without to perform a
seed based analysis
You can't on either occasion just using preproc-sess. You can
create an analysis with those components, then run selxavg3-sess
with the -svres option. This will create a folder called eres with
volumes that have had all the nuisance variables and low
freqeuncies regressed out
On 3/14/17 12:32 PM, std...@virgilio.it
wrote:
Thanks.
1- By using only preproc-sess, how can I perform "band pass
filtering"?
2- And how can I take in account the nuisance variables: the
CSF from which the top 5 principle components, the white matter
from which the top 5 principle components, motion correction
parameters (-mcextreg), 5th order polynomial. How can I
eliminate the first 4 time points?
Regards
Stefano
----Messaggio originale----
Da: "Douglas Greve" <gr...@nmr.mgh.harvard.edu>
Data: 14-mar-2017 16.14
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] Whole preprocessing with FAST without to
perform a seed based analysis
just use preproc-sess
On 3/14/17 10:45 AM, std...@virgilio.it
wrote:
Hi list,
in FS-FAST, on rs-fMRI data, is possible to run
selxavg3-sess without -a option?
I would use whole the FS-FAST to preprocess my data.
I would include the mkanalysis-sess step but I would not
perform a seed-based analysis.
Thanks
Stefano
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