Hello,
I am getting an odd bug on selxavg3-sess. I am getting the error message,
*ERROR: cannot find [rest of file path]/fmc.sm0*
I am indicating zero smoothing in mkanalysis-sess ("-fwhm 0"). I am
confused because the output of preproc-sess for no smoothing is
fmc.nii.gz, *NOT
*fmc.sm0.nii.gz when doing analyses in native volume space, so I am not
sure why selxavg-sess is looking for the wrong file path. For reference,
here is my call to mkanalysis-sess:
mkanalysis-sess -analysis analysis_name -fsd bold -runlistfile runlist.txt
-native -nuisreg mcextreg 3 -fwhm 0 -event-related -nconditions 8
-paradigm spiralpara.par -spmhrf 0 -refeventdur 12 -TR 1.5
-polyfit 2 -nskip 8
I am using Freesurfer 5.3, if that helps. The analysis works fine when I
apply 3mm smoothing (I've done preprocessing for both the 0mm and 3mm
options).
Thank you very much, and cheers,
JohnMark
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