Hi Manuel
how do you know it is binary? Have you tried changing the window levels
in freeview when you view it? And in general when you report errors
please include the full screen output of what you ran, and in cases like
this, and image to illustrate the issue.
cheers
Bruce
On Fri, 17 Mar 2017, Manuel Delgado
wrote:
After recon-all (recon-all -all -s 479_001), which finished without errors,
the T1.mgz appears as a binary mask. I am using Freesurfer v 6.0 and Ubuntu
16.04. Please let me know if you need further files.
Thank you,
Manuel
On Thu, Mar 16, 2017 at 4:09 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:
what is the error exactly? Please provide the recon-all.log file
and a
description of the problem
On 03/16/2017 06:28 AM, Manuel Delgado wrote:
> Dear list,
> After recon-all the T1 seems to have an error. Has anybody had
this
> problem before? Please find attached the image. I guess I have
to
> recon-all again. I am using v 6.0 with Ubuntu 16.04.
> Thank you.
>
> --
> *Manuel Delgado Alvarado, MD*
> Neurology Department
> Neuroimaging Unit
> Valdecilla Biomedical Research Institute, IDIVAL
> Santander, SPAIN
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
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Neuroimaging Unit
Valdecilla Biomedical Research Institute, IDIVAL
Santander, SPAIN
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