After recon-all (recon-all -all -s 479_001), which finished without errors, the T1.mgz appears as a binary mask. I am using Freesurfer v 6.0 and Ubuntu 16.04. Please let me know if you need further files. Thank you,
Manuel On Thu, Mar 16, 2017 at 4:09 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > what is the error exactly? Please provide the recon-all.log file and a > description of the problem > > > On 03/16/2017 06:28 AM, Manuel Delgado wrote: > > Dear list, > > After recon-all the T1 seems to have an error. Has anybody had this > > problem before? Please find attached the image. I guess I have to > > recon-all again. I am using v 6.0 with Ubuntu 16.04. > > Thank you. > > > > -- > > *Manuel Delgado Alvarado, MD* > > Neurology Department > > Neuroimaging Unit > > Valdecilla Biomedical Research Institute, IDIVAL > > Santander, SPAIN > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- *Manuel Delgado Alvarado, MD* Neurology Department Neuroimaging Unit Valdecilla Biomedical Research Institute, IDIVAL Santander, SPAIN
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