Hi Cristian,
Can you send me the original mri_cvs_register command? When I apply the
m3z transform to your moving volume the result is not registered to the
target.
set morph = combined_toColin27_elreg_aseg.m3z
set targ = N27orig.mgz
set mov = TS076CDorig.mgz
set out = ${mov:r}.2.${targ}
mri_vol2vol --mov $mov --targ $targ --o $out --m3z $morph --noDefM3zPath
Lilla
On Thu, 2 Mar 2017, Donos, Cristian wrote:
> I have uploaded the files i am using.
>
> After updating to Freesurfer 6.0, i was able to use fullCSVmorph.tm3d, but
> the coordinates in the output file remain unchanged.
> The other tm3d files in my csv folder return 10000 10000 10000 for each point
> in the input txt file.
>
> Best,
> Cristian
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>
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