Hi Cristian,
Can you upload your files for us?
https://gate.nmr.mgh.harvard.edu/filedrop2/
Lilla
On Tue, 28 Feb 2017, Donos, Cristian wrote:
Hi,
I was able to apply the morph using combined_toColin27_elreg_aseg.tm3d instead
of fullCSVmorph.tm3d.
The resulting coordinates are wrong, but it proves that memory is not an issue
- combined_toColin27_elreg_aseg.tm3d is 458MB, while fullCVSmorph.tm3d is only
50Mb.
So what else can be the issue?
Best,
Cristian
applyMorph --template /Volumes/Sector2/surfaces/TandonLang/TT_N27/mri/orig.mgz
--transform combined_toColin27_elreg_aseg.tm3d point_list coords.txt
transformed_coords.txt linear
Template name:/Volumes/Sector2/surfaces/TandonLang/TT_N27/mri/orig.mgz
After loading template
Template name:/Volumes/Sector2/surfaces/TandonLang/TT_N27/mri/orig.mgz
After loading template
extension = tm3d
data size = 110494908
uilen = 6
loading transform id string =
data size = 16
uilen = 3
loading transform id string =
data size = 20740581
uilen = 6
loading transform id string =
data size = 20473944
uilen = 6
loading transform id string =
data size = 20218265
uilen = 6
loading transform id string =
data size = 19973768
uilen = 6
loading transform id string =
data size = 19749328
uilen = 6
loading transform id string =
data size = 19541370
uilen = 6
loading transform id string =
data size = 19323542
uilen = 6
loading transform id string =
data size = 19131546
uilen = 6
loading transform id string =
data size = 18921656
uilen = 6
loading transform id string =
data size = 18764984
uilen = 6
loading transform id string =
data size = 18618427
uilen = 6
loading transform id string =
data size = 18553570
uilen = 6
loading transform id string =
data size = 18408866
uilen = 6
loading transform id string =
data size = 18337646
uilen = 6
loading transform id string =
data size = 18424799
uilen = 6
loading transform id string =
data size = 18774041
uilen = 6
loading transform id string =
data size = 20572783
uilen = 6
loading transform id string =
data size = 19438063
uilen = 6
loading transform id string =
data size = 71
uilen = 7
loading transform id string =
loaded transform
executing filter on file coords.txt
morph applied in 1.86923 minutes
On Feb 21, 2017, at 11:10 AM, Donos, Cristian
<cristian.do...@uth.tmc.edu> wrote:
Hi Lilla,
It’ s a Mac Pro with 64Gb Ram.
Best,
Cristian
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
