That does not make sense. Can you run this subject in v6? If the problem goes away, then there is not much we can do about it in 5.3
On 02/28/2017 05:27 AM, Melanie Ganz wrote: > Hi Doug, > > the orig looks fine and we cannot see a file orig.nofix in the subject > dirs. We still use v5.3. > > But what we tried now for another similar subject was to remove > falsely labelled white matter in dura which was far away, but that > fixed the white matter errors so far inside the brain. Does that make > any sense to you why that helps? > > Cheers, > Mel > > > > On 27-02-2017 5:23, Douglas Greve wrote: >> >> Hi Mel, how does the orig or orig.nofix look? >> >> >> On 2/24/17 9:21 AM, Melanie Ganz wrote: >>> Dear list, >>> >>> we are experiencing a strange wm surface error that we are not quite >>> sure about how to fix. The errors is at a location where the wm.mgz >>> look absolutely fine as well as the brainmask.mgz. Also the >>> intensities in the norm.mgz look fine. >>> >>> Please find 6 pics showing the error highlighted by the cursor on >>> the brainmask.mgz and the wm.mgz in all three views. >>> >>> Cheers, >>> Mel >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > > -- > Melanie Ganz-Benjaminsen, MSc, Ph.D. > Neurobiology Research Unit > University of Copenhagen > Rigshospitalet > Rockefeller Center > Juliane Maries Vej 28/30, 3. > DK-2100 Copenhagen > Denmark > > phone: +45 3545 6718 > e-mail:melanie.g...@nru.dk > web:http://melanie.clausundmelanie.de/ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
