yea, you have to run it on a surface, usually the white, eg, mris_inflate -n 5 -no-save-sulc lh.white lh.inflated.anna
On 03/01/2017 11:45 AM, Crawford, Anna wrote: > I did: > > mris_inflate -n 5 wmparc.mgz inflateTest.mgz > > I wasn't sure oh what my input file should be. It resulted in the following > message: > > No such file or directory > freadFloat: fread failed > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > Sent: Wednesday, March 1, 2017 11:41 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Inflated Volume > > what is your mris_inflate command line? > > > On 03/01/2017 11:20 AM, Crawford, Anna wrote: >> Hi, >> >> >> I am using a volume to create a surface overlay. I am currently >> overlaying onto the ?h.inflated volumes created when recon-all is >> executed. These volumes are overinflated for what I want. Is there a >> way I can create a less inflated, inflated-volume? I was looking at >> mris_inflate, and was thinking maybe it had to do with the iteration >> number. I was not able to get this command to execute though. Is there >> a way to do this? >> >> >> Thanks, >> >> Anna >> >> =================================== >> >> Please consider the environment before printing this e-mail >> >> Cleveland Clinic is ranked as one of the top hospitals in America by >> U.S.News & World Report (2015). Visit us online at >> http://www.clevelandclinic.org for a complete listing of our services, >> staff and locations. Confidentiality Note: This message is intended >> for use only by the individual or entity to which it is addressed and >> may contain information that is privileged, confidential, and exempt >> from disclosure under applicable law. If the reader of this message is >> not the intended recipient or the employee or agent responsible for >> delivering the message to the intended recipient, you are hereby >> notified that any dissemination, distribution or copying of this >> communication is strictly prohibited. If you have received this >> communication in error, please contact the sender immediately and >> destroy the material in its entirety, whether electronic or hard copy. >> Thank you. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > =================================== > > > Please consider the environment before printing this e-mail > > Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News > & World Report (2015). > Visit us online at http://www.clevelandclinic.org for a complete listing of > our services, staff and locations. > > > Confidentiality Note: This message is intended for use only by the > individual or entity to which it is addressed and may contain information > that is privileged, confidential, and exempt from disclosure under applicable > law. If the reader of this message is not the intended recipient or the > employee or agent responsible for delivering the message to the intended > recipient, you are hereby notified that any dissemination, distribution or > copying of this communication is strictly prohibited. If you have received > this communication in error, please contact the sender immediately and > destroy the material in its entirety, whether electronic or hard copy. > > Thank you. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
