Can you send your freeview command line and pictures of the mismatch?
On 2/9/17 5:58 PM, Zhewei Wang wrote:
Hi all,
I have a problem maybe relevant to the orientation of images in
freeview. I have two images, one is fMRI and one is MRI. They are
produced from the same machine at the same time. I loaded both of them
in freeview and it showed they are matched very well, even they have
different resolutions, different orientation (fMRI is LAS and MRI is
PSR), different sform and qform. I registrated MRI to MNI152, and a
transformation matrix is generated. I apply this matrix on fMRI, then
I got the wrong result: I loaded the fMRI after transformation and
MNI152 in freeview, they are not matched. I use /flirt/ for registration.
Can anyone explain to me why it happened? At beginning they are shown
matched in freeview, even they have different orientation. After apply
same transformation, they are shown not matched in freeview even they
have same orientation now (both are LAS).
Thank you so much.
Zhewei
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
