Hi all,
I have successfully ran recon-all on my subjects with multiple T1s. We want to
use flair to refine pial surfaces as for all the subjects pial surfaces are
messy and will demand lots of control point edits.
After successfully running entire recon-all stream I am running following
command to incorporate flair:
recon-all -autorecon3 \
-s SUBJ \
-bbr-init-header \
-FLAIRpial \
-bigventricles \
-openmp 12 \
-qcache
When I run above command recon-all exits while implementing mris_make_surfaces
with an error "Cannot allocate memory"
Can someone guide what is happening? Is it that there are large topological
error or bbr-init-header flag will only run if I run recon-all from autorecon1
to autorecon3 stage?
Thanks,
Sneha
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