Hi Bruce,
Total is 231111108 kB from /proc/meminfo and flair vozel size is 1.0000, 0.9766, 0.9766. I ran quite a few recon-all after this one failed and it did not complain. It just fails when I run recon-all -autorecon3 with -bbr-init-header flag. Thanks, Sneha ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: Wednesday, January 18, 2017 11:09:36 AM To: Freesurfer support list Subject: Re: [Freesurfer] mris_make_surfaces error with bbr-init-header Hi Sneha how much RAM do you have in your machine? And what is the resolution of your data? cheers Bruce On Wed, 18 Jan 2017, Sneha Pandya wrote: > > Hi all, > > > I have successfully ran recon-all on my subjects with multiple T1s. We want > to use flair to refine pial surfaces as for all the subjects pial surfaces > are messy and will demand lots of control point edits. > > > > After successfully running entire recon-all stream I am running following > command to incorporate flair: > > > recon-all -autorecon3 \ > -s SUBJ \ > -bbr-init-header \ > -FLAIRpial \ > -bigventricles \ > -openmp 12 \ > -qcache > > When I run above command recon-all exits while implementing > mris_make_surfaces with an error "Cannot allocate memory" > > Can someone guide what is happening? Is it that there are large topological > error or bbr-init-header flag will only run if I run recon-all from > autorecon1 to autorecon3 stage? > > Thanks, > > Sneha > > > >
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