Yea, this bug has been there for a while. We are trying to get people to use freeview instead as tksurfer will not be developed further. You can try using tksurferfv (see below). This is a script that takes tksurfer arguments and creates a freeview command line. Not sure it will work in 5.3, but you can try it
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tksurferfv On 09/08/2016 04:01 PM, Taylor, Johnmark wrote: > Hello, > > I am trying to load five overlays on TKSurfer from the command line > (actual command attached). The problem is this: if I try to load five > different overlays, the fifth one will show up on Freesurfer as being > identical to the first one (for instance, in this example, the > "all-slope" overlay will appear visually identical to the "fs-slope" > overlay, even though I've verified that the files are different). > Furthermore, if you try to load six, then the fifth overlay will look > the same as the first, the sixth will look the same as the second, and > so forth. If I manually add the overlays from the menu in tksurfer > this doesn't happen, but I'd prefer not to have to do this. Any idea > what could be going on? Apologies that the command is a mess to read: > in case it isn't clear, I am calling the overlay flag five separate > times, once for each desired overlay. > > Thanks, > > JohnMark > > tksurfer green_ant lh inflated -gray -title green_ant_lh *-overlay* > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/glm_sm5_ps/fs-slope/sig.nii.gz > > -orf > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/register.dof6.dat > > -fminmax 2 5 *-overlay* > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/glm_sm5_ps/fo-slope/sig.nii.gz > > -orf > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/register.dof6.dat > > -fminmax 2 5 *-overlay* > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/glm_sm5_ps/ps-slope/sig.nii.gz > > -orf > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/register.dof6.dat > > -fminmax 2 5 *-overlay* > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/glm_sm5_ps/po-slope/sig.nii.gz > > -orf > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/register.dof6.dat > > -fminmax 2 5 *-overlay* > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/glm_sm5_ps/all-slope/sig.nii.gz > > -orf > /ncf/vcn/jtaylor/mri-space/studies/supips_loccompare01/unpackdata/160805_xu_supips_loccompare01_sub01/bold/register.dof6.dat > > -fminmax 2 5 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
