I don't think robust register will work as that assumes that the 
modalites are the same. You can try using mri_coreg, which you can find 
here:

ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg



On 09/08/2016 03:51 PM, Frank Robert wrote:
> Hello FreeSurfer expert
>
> I want to use registration tools of FreeSurfer to register arterial 
> spin labeling (ASL) images to DWI images in stroke study.  Is there 
> any material to talk about this topic?
>
> I use mri_robust_register to register 8 slice ASL images to 28 slices 
> DWI images, Attached is the images I got.  After the registration,  
> the orientation  is different. 
> <https://surfer.nmr.mgh.harvard.edu/fswiki/mri_robust_register>
>
> Does anyone as suggestion?
>
> Frank Yu
>
> ​
>
>
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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