try this version and let me know if it works. ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert If not, please send me the dicom via filedrop below
On 06/30/2016 05:45 AM, Leonardo Tozzi wrote: > > To Whom it may concern, > > > I have tried to run the recon-all pipeline on some T1 data and have > encountered the following error: > > > nifti1Read(): unsupported slice timing pattern 5 > > > I have browsed the previous threads about it and it appears that it > should have been fixed in version 5.3 but that is the version I run > and the error is still there. > > The data has been converted to NIFTI from DICOM using MRIcron and I > don't have access to the original DICOMs. > > I have seen that someone posted a modified version of nifti1Read() in > the past and I was wondering if it was still available. > > I am running Freesurfer 5.3.0 on MacOSX El Capitan 10.11.3. > > Would you have any suggestions on how to proceed? > > Thank you very much. > > Yours faithfully, > > > > Leonardo Tozzi, MD > > PhD Student > > Trinity College Institute of Neuroscience > > College Green, Dublin 2 > > Ireland > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
