To Whom it may concern,

I have tried to run the recon-all pipeline on some T1 data and have encountered 
the following error:


nifti1Read(): unsupported slice timing pattern 5


I have browsed the previous threads about it and it appears that it should have 
been fixed in version 5.3 but that is the version I run and the error is still 
there.

The data has been converted to NIFTI from DICOM using MRIcron and I don't have 
access to the original DICOMs.

I have seen that someone posted a modified version of nifti1Read() in the past 
and I was wondering if it was still available.

I am running Freesurfer 5.3.0 on MacOSX El Capitan 10.11.3.

Would you have any suggestions on how to proceed?

Thank you very much.

Yours faithfully,



Leonardo Tozzi, MD

PhD Student

Trinity College Institute of Neuroscience

College Green, Dublin 2

Ireland
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