On 1 July 2016 at 17:48, Derek Pisner <dpis...@psychiatry.arizona.edu> wrote:
> Here is the output attachment.
Hmmm.... this is the actual error:
======
gcc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include/dicom
-I../xml2 -I../include/NrrdIO -DTEEM_DIO=0 -DTEEM_32BIT=0
-DTEEM_QNANHIBIT=1 -DTEEM_ENDIAN=1234 -I../jpeg -I../tiff -I../expat
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Algorithms
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/BasicFilters
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Common
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/IO
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Numerics
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Numerics/Statistics
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Review
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Review/Statistics
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/SpatialObject
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/itk/current/include/InsightToolkit/Utilities
-DHAVE_ITK_LIBS -I../glut -DHAVE_GLUT_LIBS
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/vxl/current/include/vxl/core
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/vxl/current/include/vxl/vcl
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/vxl/current/include/vxl/v3p/netlib
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/vxl/current/include/vxl/v3p/netlib/opt
-I/usr/local/cuda/include -DHAVE_ZLIB -g -O3 -msse2 -mfpmath=sse -Wall
-DUSE_SSE_MATHFUN -fopenmp -DHAVE_OPENMP -m64 -DLinux -DANSI
-fdata-sections -ffunction-sections -Wl,--gc-sections
-I/home/scanlab/Desktop/Derek/centos6-x86_64-packages/mni/current/include
-DFS_CUDA -I/usr/local/cuda/include -DGCAMORPH_ON_GPU -MT
libutils_cuda_a-mrisurf.o -MD -MP -MF
.deps/libutils_cuda_a-mrisurf.Tpo -c -o libutils_cuda_a-mrisurf.o
`test -f 'mrisurf.c' || echo './'`mrisurf.c
In file included from /usr/local/cuda/include/cuda_runtime.h:59:0,
from ../include/mrisurf_cuda.h:28,
from mrisurf.c:664:
/usr/local/cuda/include/host_config.h:159:2: error: #endif without #if
#endif /* !__HOST_CONFIG_H__ */
======
I've just tried doing a git pull, and restarting from
./setup_configure, and I can't reproduce this, I'm afraid.
You do absolutely want to have --enable-fermi-gpu set, though. Fermi
is five years old, and that flag enables most of the acceleration of
mri_ca_register.
Richard
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