Dear FSL expert: Firstly, I would like to thank for the reply from Douglas. Thank you for your suggestion! aparcstats2table is working!.
Then, I have another question about the brainstem substructures. According to the guideline, https://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime I download the environment and successfully installed. However, when I running command " recon-all -s subject -brainstem-structures" it shows wrong message "ERROR: Flag -brainstem-structures unrecognized. -s 201 -brainstem-structures" So how can I fix it? Is that due to FSL version problem? If yes, how can I update to freesurfer 6.0? thanks! Lawrence Emory.
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