I have the following error: unknown option --cras_correction. I am using FreeSurfer 5.3, I don't known if it helps.
By the way, I was wondering: why this c_ras vector is not taken into by default e.g. with mris_convert or mri_tesselate ? 2016-06-07 16:54 GMT+02:00 Douglas Greve <gr...@nmr.mgh.harvard.edu>: > Try adding --cras_correction to the command line and see if it works. > > > > On 6/7/16 10:27 AM, Alexandre Routier wrote: > > Hello, > > I would like to work with mesh representation of pial and white surfaces > in vtk format. To do that, I use the following syntax: > mris_convert lh.pial lh.pial.vtk > > However, there is a small issue after conversion: the vector called > 'c_ras' (the RAS at the 'center' of the volume according to mri_info) is > not taken into account. I can manually add this c_ras vector to correct > that but I was wondering if there was any flag for mris_convert or a > special command to do that ? > > This kind of flag exists for mri_tesselate (with -n flag which ables to "save > surface with real RAS coordinates where c_(r,a,s) != 0") so I was hoping > the same kind of flags for mris_convert. > > Thanks in advance for your answer ! > > Alexandre > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
