To see whether the final label is correct, load the label in freeview or tksurfer and see if it looks right.
You can use mris_anatomical_stats to get the volumes, etc, from the label (-l option). You may want to recombine the lobes into an annotation with mris_label2annot doug On 05/05/2016 12:17 PM, Heidi Foo wrote: > Dear FreeSurfer experts, > > I apologise for posting this again. I am unable to get the volumes for > the cortical regions despite following the commands on > https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation > > I am using FS5.3 to do the parcellation. > > I created a folder called "labels" inside each of my subject folder. > Attached the output. > > I tried to use mri_mergelabels -i label1 -i label2 -o outputlabel. > Attached the command as well as the output. > *I am not sure if the output is correct and also, how should I get the > total volume for each lobe out? * > Thank you so much for your help. > Regards, > Heidi Foo > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
