Hello Burce, Thank you for the reply, I see well I would want to use the surfaces then. Would you recommend something like running recon-all and using -nosphere?
-Taha On Sat, Apr 30, 2016 at 1:14 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Taha > > you can, but it won't be as accurate since the surfaces give better > estimates of cortex and such (and we use them to automatically correct the > aseg). You can run the individual steps through the end of mri_ca_label if > you want to stop there > > cheers > Bruce > > > On Fri, 29 Apr 2016, Taha Abdullah wrote: > > Hello All, >> I am running an analysis strictly on subcortical volumes, and to save time >> and disk space I wanted to avoid if possible construction of surfaces and >> seems that it is necessary? I first ran recon-all -autorecon1, second I >> ran >> recon-all -subcortseg and the final error was regarding no such file or >> dir, specifically the /surf/lh.white. >> >> Is there a better way to run this type of analysis to save disk space and >> time? Possibly using -autorecon2'; would love any input. Thank you in >> advance! >> >> -- >> Taha Abdullah >> Department of Physiology >> Northwestern University >> Masters of Science Physiology and Biophysics, Georgetown University 2015 >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Taha Abdullah Department of Physiology Northwestern University Masters of Science Physiology and Biophysics, Georgetown University 2015
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