Thanks for your help - I'll look into it and let you know if I have problems
Michael -----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: 01 April 2016 16:19 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer scale bar you can also try tksurferfv. this is a frontend for freeview that takes tksurfer-style arguments On 04/01/2016 09:57 AM, Bruce Fischl wrote: > > freeview -f lh.inflated:overlay=lh.pet_data.mgz > > would be a good place to start. There's lots of stuff on the wiki > cheers Bruce > > > > On Fri, 1 Apr 2016, Michael Asghar wrote: > >> Oh, I didn't know that. I've been advised to use tksurfer (we're >> trying to get nice images of PET data overlaid on surfaces). >> >> I haven't got a clue how to use freeview - any simple commands to >> load up a surface, overlay some statistical data? >> >> Thanks! >> Michael >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce >> Fischl >> Sent: 01 April 2016 14:44 >> To: Freesurfer support list >> Subject: Re: [Freesurfer] tksurfer scale bar >> >> Hi Michael >> >> tksurfer is deprecated - have you tried this in freeview? >> >> cheers >> Bruce >> On Fri, 1 Apr >> 2016, Michael Asghar wrote: >> >>> >>> Hi Freesurfer >>> >>> >>> >>> I'm struggling with trying to edit the scale bar in tksurfer. >>> Commands like 'set scalebar_bright 240' work, but draw_scalebar >>> gives an invalid command error. >>> >>> I've tried redrawing, but it doesn't help. >>> >>> >>> >>> Basically, I want the black background to become white (can do it >>> via convert -fill white -opaque black input.tiff output.tiff), but >>> the numbers on the scalebar are invisible now - I need the scale bar >>> text to be black. >>> >>> >>> >>> Also, I get two bits to my scalebar, e.g. negative values at the >>> bottom from >>> -5 to -3, then a grey gap and then positive 3 to 5 in hot colours. >>> How do I get just the positive T values in a suitable distance (they >>> are currently squeezed up at either side). >>> >>> >>> >>> Thanks! >>> >>> Michael >>> >>> >>> >>> This message and any attachment are intended solely for the >>> addressee and may contain confidential information. If you have >>> received this message in error, please send it back to me, and immediately >>> delete it. >>> >>> Please do not use, copy or disclose the information contained in >>> this message or in any attachment. Any views or opinions expressed >>> by the author of this email do not necessarily reflect the views of >>> the University of Nottingham. >>> >>> This message has been checked for viruses but the contents of an >>> attachment may still contain software viruses which could damage >>> your computer system, you are advised to perform your own checks. >>> Email communications with the University of Nottingham may be >>> monitored as permitted by UK legislation. >>> >>> >> >> >> >> >> This message and any attachment are intended solely for the addressee >> and may contain confidential information. If you have received this >> message in error, please send it back to me, and immediately delete it. >> >> Please do not use, copy or disclose the information contained in this >> message or in any attachment. Any views or opinions expressed by the >> author of this email do not necessarily reflect the views of the >> University of Nottingham. >> >> This message has been checked for viruses but the contents of an >> attachment may still contain software viruses which could damage your >> computer system, you are advised to perform your own checks. Email >> communications with the University of Nottingham may be monitored as >> permitted by UK legislation. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system, you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
