you can also try tksurferfv. this is a frontend for freeview that takes tksurfer-style arguments
On 04/01/2016 09:57 AM, Bruce Fischl wrote: > > freeview -f lh.inflated:overlay=lh.pet_data.mgz > > would be a good place to start. There's lots of stuff on the wiki > cheers > Bruce > > > > On Fri, 1 Apr 2016, Michael Asghar wrote: > >> Oh, I didn’t know that. I've been advised to use tksurfer (we're >> trying to get nice images of PET data overlaid on surfaces). >> >> I haven't got a clue how to use freeview - any simple commands to >> load up a surface, overlay some statistical data? >> >> Thanks! >> Michael >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce >> Fischl >> Sent: 01 April 2016 14:44 >> To: Freesurfer support list >> Subject: Re: [Freesurfer] tksurfer scale bar >> >> Hi Michael >> >> tksurfer is deprecated - have you tried this in freeview? >> >> cheers >> Bruce >> On Fri, 1 Apr >> 2016, Michael Asghar wrote: >> >>> >>> Hi Freesurfer >>> >>> >>> >>> I’m struggling with trying to edit the scale bar in tksurfer. Commands >>> like ‘set scalebar_bright 240’ work, but draw_scalebar gives an >>> invalid command error. >>> >>> I’ve tried redrawing, but it doesn’t help. >>> >>> >>> >>> Basically, I want the black background to become white (can do it via >>> convert –fill white –opaque black input.tiff output.tiff), but the >>> numbers on the scalebar are invisible now – I need the scale bar >>> text to be black. >>> >>> >>> >>> Also, I get two bits to my scalebar, e.g. negative values at the >>> bottom from >>> -5 to -3, then a grey gap and then positive 3 to 5 in hot colours. How >>> do I get just the positive T values in a suitable distance (they are >>> currently squeezed up at either side). >>> >>> >>> >>> Thanks! >>> >>> Michael >>> >>> >>> >>> This message and any attachment are intended solely for the addressee >>> and may contain confidential information. If you have received this >>> message in error, please send it back to me, and immediately delete it. >>> >>> Please do not use, copy or disclose the information contained in this >>> message or in any attachment. Any views or opinions expressed by the >>> author of this email do not necessarily reflect the views of the >>> University of Nottingham. >>> >>> This message has been checked for viruses but the contents of an >>> attachment may still contain software viruses which could damage your >>> computer system, you are advised to perform your own checks. Email >>> communications with the University of Nottingham may be monitored as >>> permitted by UK legislation. >>> >>> >> >> >> >> >> This message and any attachment are intended solely for the addressee >> and may contain confidential information. If you have received this >> message in error, please send it back to me, and immediately delete it. >> >> Please do not use, copy or disclose the information contained in this >> message or in any attachment. Any views or opinions expressed by the >> author of this email do not necessarily reflect the views of the >> University of Nottingham. >> >> This message has been checked for viruses but the contents of an >> attachment may still contain software viruses which could damage your >> computer system, you are advised to perform your own checks. Email >> communications with the University of Nottingham may be monitored as >> permitted by UK legislation. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
