5.3.0 stable
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Matt Glasser
Sent: Monday, 7 March 2016 11:50 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] T2pial shrinks pial surface
What FreeSurfer version are you using? Very small changes to the input images
(e.g. a different random see for FreeSurfer) may be able to kick
mris_make_surfaces out of that bug, though perhaps Bruce has fixed it.
Peace,
Matt.
From:
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Chris Adamson
<chris.adam...@mcri.edu.au<mailto:chris.adam...@mcri.edu.au>>
Reply-To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Sunday, March 6, 2016 at 6:14 PM
To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>"
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] T2pial shrinks pial surface
The T2pial option mostly works beautifully. I have a few cases where the pial
surface just shrinks globally and wraps over the white surface (see attached).
I have checked the T2.mgz and the registration with the T1 is fine. This
happens sometimes in one hemisphere only.
Any ideas?
[cid:image001.jpg@01D17868.5965F100]
Chris Adamson
Senior Research Officer
Developmental Imaging
Murdoch Childrens Research Institute
The Royal Children's Hospital
Flemington Rd Parkville, Victoria 3052 AUS
T: (03) 9936 6780
E: chris.adam...@mcri.edu.au<mailto:chris.adam...@mcri.edu.au>
www.mcri.edu.au<http://www.mcri.edu.au/>
[cid:image002.png@01D17868.5965F100]<https://www.facebook.com/MurdochChildrensResearchInstitute>[cid:image003.png@01D17868.5965F100]<https://twitter.com/MCRI_for_kids>[cid:image004.png@01D17868.5965F100]<http://instagram.com/murdoch_childrens>[cid:image005.png@01D17868.5965F100]<http://www.youtube.com/user/MurdochChildrens/videos>[cid:image006.jpg@01D17868.5965F100]<https://donate.mcri.edu.au/>
This e-mail and any attachments to it (the "Communication") are, unless
otherwise stated, confidential, may contain copyright material and is for the
use only of the intended recipient. If you receive the Communication in error,
please notify the sender immediately by return e-mail, delete the Communication
and the return e-mail, and do not read, copy, retransmit or otherwise deal with
it. Any views expressed in the Communication are those of the individual sender
only, unless expressly stated to be those of Murdoch Childrens Research
Institute (MCRI) ABN 21 006 566 972 or any of its related entities. MCRI does
not accept liability in connection with the integrity of or errors in the
Communication, computer virus, data corruption, interference or delay arising
from or in respect of the Communication.
PPlease consider the environment before printing this email
______________________________________________________________________
This email has been scanned by the Symantec Email Security.cloud service.
For more information please visit http://www.symanteccloud.com
______________________________________________________________________
_______________________________________________ Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in
this e-mail is intended only for the person to whom it is addressed. If you
believe this e-mail was sent to you in error and the e-mail contains patient
information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and
properly dispose of the e-mail.
______________________________________________________________________
This email has been scanned by the Symantec Email Security.cloud service.
For more information please visit http://www.symanteccloud.com
If you have any questions, please contact MCRI IT Servicedesk for further
assistance.
______________________________________________________________________
______________________________________________________________________
This email has been scanned by the Symantec Email Security.cloud service.
For more information please visit http://www.symanteccloud.com
______________________________________________________________________
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
