Hi Bruce, I checked and it is indeed a volume file with 256x256x256 size. The full command line was: mris_make_surfaces -cover_seg edited_ribbon.mgz subject_id lh
Thanks Corinna On Sat, Feb 20, 2016 at 1:38 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Corinna > > can you send us your full command line? Sounds like you are using a > surface overlay as the cover_seg parameter instead of a volume one. Try > running mri_info on it to make sure it is a volume (i.e. 256x256x256). If > not, you will need to sample it into the volume with mri_surf2vol > > thanks > Bruce > > On Thu, 18 Feb 2016, Corinna Bauer > wrote: > > > Hello all, > > I am attempting to reshape the pial surfaces to fill the new boundaries > in > > my edited ribbon.mgz file. I am using mris_make_surfaces with the > -cover_seg > > flag but keep getting this error: > > ERROR: mris_make_surfaces-MRIcheckVolDims: volume1 height=256 != volume2 > > height=1. > > > > Any suggestions? > > > > Thanks! > > Corinna > > > > FYI: I am trying to reshape the pial boundary based off this previous > > thread. > > > https://mail.nmr.mgh.harvard.edu/pipermail///freesurfer/2014-November/04134 > > 8.html > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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