Maybe to avoid problems with strange subdirs (like fsaverage), use
|asegstats2table --subjects ??? \ --segno 11 17 18 \ --tablefile
aseg.vol.table|
if all subjects ids are three digits.
Best, Martin
On 01/22/2016 10:38 AM, Douglas Greve wrote:
It should take wild cards
On 1/21/16 8:16 PM, Luis Fernado Silva Castro de Araújo wrote:
Hi Freesurfer experts,
I wonder if there is a way of extracting the stats for all patients
in my last run at the same time. I have around 120 observations and
the asegstats2table syntax works in such a way that all the patients
names should be listed:
|asegstats2table --subjects 004 021 040 067 080 092 \ --segno 11 17 18
\ --tablefile aseg.vol.table |
I hope I am wrong, but it seems that the —subjects argument does not
accept substitution with wildcards, like |*| or |*.*|
Is there a way to make the command run the extraction of the
statistics in all subjects within the $SUBJECTS_DIR in order to avoid
typing all the 120 folder names? A bash script would do too.
Thanks,
luis
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--
Martin Reuter, PhD
Assistant Professor of Radiology, Harvard Medical School
Assistant Professor of Neurology, Harvard Medical School
A.A.Martinos Center for Biomedical Imaging
Massachusetts General Hospital
Research Affiliate, CSAIL, MIT
Phone: +1-617-724-5652
Web : http://reuter.mit.edu
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