Hi Freesurfer experts,

I wonder if there is a way of extracting the stats for all patients in my
last run at the same time. I have around 120 observations and the
asegstats2table syntax works in such a way that all the patients names
should be listed:

asegstats2table --subjects 004 021 040 067 080 092 \
  --segno 11 17 18 \
  --tablefile aseg.vol.table

I hope I am wrong, but it seems that the —subjects argument does not accept
substitution with wildcards, like * or *.*

Is there a way to make the command run the extraction of the statistics in
all subjects within the $SUBJECTS_DIR in order to avoid typing all the 120
folder names? A bash script would do too.

Thanks,

luis
​
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to