Hi Ankita dicom is perfect. Just give recon-all a single file from the correct dicom series and it will figure out the rest of them Bruce On Mon, 18 Jan 2016, Arindam Chatterjee wrote:
> > Hi Bruce, > Thank you for your prompt response! Sorry for my novice questions - does > T1-weighted scan with voxels have to be in a specific format like jpg, dicom > or mesh format? > Ankita > > On Mon, Jan 18, 2016 at 1:59 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > Hi Ankita > > sure, we compute GI. You need to get a good T1-weighted scan > with voxels > that are about 1mm isotropic, then run it through our recon-all > script > > cheers > Bruce > On > Mon, 18 Jan 2016, Arindam Chatterjee wrote: > > > Hello,I am a new user of the freesurfer platform. I am a high > school junior > > conducting research on brain MRI scans and came across this > wonderful > > platform. However I am not very sure how to proceed with my > research - I am > > trying to find the whole brain Gyrification Index, which I did > manually on a > > different software called ImageJ using multiple image scans of > brain slices. > > Will freesurfer be able to analyze brain scan images and > provide a whole > > brain GI or does it only analyse and provide local GI which is > what I found > > through some forums? If so, are there any tutorials to learn > how to do that? > > Do I need any other software like MatLab to find out the > Gyrification Index? > > > > Thank you in advance! > > Ankita > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person > to whom it is > addressed. If you believe this e-mail was sent to you in error > and the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
