Hi Bruce, Thank you for your prompt response! Sorry for my novice questions - does T1-weighted scan with voxels have to be in a specific format like jpg, dicom or mesh format?
Ankita On Mon, Jan 18, 2016 at 1:59 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Ankita > > sure, we compute GI. You need to get a good T1-weighted scan with voxels > that are about 1mm isotropic, then run it through our recon-all script > > cheers > Bruce > On > Mon, 18 Jan 2016, Arindam Chatterjee wrote: > > > Hello,I am a new user of the freesurfer platform. I am a high school > junior > > conducting research on brain MRI scans and came across this wonderful > > platform. However I am not very sure how to proceed with my research - I > am > > trying to find the whole brain Gyrification Index, which I did manually > on a > > different software called ImageJ using multiple image scans of brain > slices. > > Will freesurfer be able to analyze brain scan images and provide a whole > > brain GI or does it only analyse and provide local GI which is what I > found > > through some forums? If so, are there any tutorials to learn how to do > that? > > Do I need any other software like MatLab to find out the Gyrification > Index? > > > > Thank you in advance! > > Ankita > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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