What happens if you try to run mri_convert ? On 01/14/2016 05:10 PM, Jasmin Alves wrote: > > Jasmins-MacBook-Pro:freesurfer jasminalves$ ls -l > $FREESURFER_HOME/bin/tksurfer > > -rwxr-xr-x 1 root wheel 103 May 14 2013 > /Applications/freesurfer/bin/tksurfer > > > Jasmins-MacBook-Pro:freesurfer jasminalves$ $> freeview -v > $SUBJECTS_DIR/bert/mri/brainmask.mgz -v > $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f > $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f > $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f > $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f > $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red > > -bash: freeview: Permission denied > > > On Thu, Jan 14, 2016 at 2:04 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Jasmin, can you just cut and paste it into the email? > > On 01/14/2016 04:59 PM, Jasmin Alves wrote: > > Here is the output to the ls command > > > > On Thu, Jan 14, 2016 at 1:55 PM, Jasmin Alves <jal...@usc.edu > <mailto:jal...@usc.edu> > > <mailto:jal...@usc.edu <mailto:jal...@usc.edu>>> wrote: > > > > Hi Dr. Greve, > > > > I am still receiving the same message that I am denied access to > > freeview. Is there anything I can do? > > > > Thanks, > > Jasmin > > > > On Thu, Jan 14, 2016 at 1:22 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > > Hi Jasmin, do you have permission to execute FS > commands? What > > is the > > result of > > ls -l $FREESURFER_HOME/bin/tksurfer > > > > > > > > On 01/14/2016 04:16 PM, Jasmin Alves wrote: > > > Hello, > > > > > > I recently downloaded freesurfer on my mac with a Yosemite > > operating > > > system. The application itself appears to work, > however I am > > not able > > > to use the command line to do any of the testing free > surfer > > commands, > > > as I keep getting a access denied. I have attached a > > screenshot. Your > > > help would be very useful. > > > > > > Thank you, > > > Jasmin > > > > > > -- > > > Jasmin Alves > > > Predoctoral Student > > > Medical Biology Graduate Program > > > University of Southern California > > > jal...@usc.edu <mailto:jal...@usc.edu> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu>> > > <mailto:jal...@usc.edu <mailto:jal...@usc.edu> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu>>> > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > > Phone Number: 617-724-2358 <tel:617-724-2358> > <tel:617-724-2358 <tel:617-724-2358>> > > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > <tel:617-726-7422>> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the > person > > to whom it is > > addressed. If you believe this e-mail was sent to you in > error > > and the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was > > sent to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > -- > > Jasmin Alves > > Predoctoral Student > > Medical Biology Graduate Program > > University of Southern California > > jal...@usc.edu <mailto:jal...@usc.edu> <mailto:jal...@usc.edu > <mailto:jal...@usc.edu>> > > > > > > > > > > -- > > Jasmin Alves > > Predoctoral Student > > Medical Biology Graduate Program > > University of Southern California > > jal...@usc.edu <mailto:jal...@usc.edu> <mailto:jal...@usc.edu > <mailto:jal...@usc.edu>> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > -- > Jasmin Alves > Predoctoral Student > Medical Biology Graduate Program > University of Southern California > jal...@usc.edu <mailto:jal...@usc.edu> > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
