Yes I did. I was on the last step, the testing freesurfer when I discovered the commands do not work
On Thu, Jan 14, 2016 at 2:14 PM, dgw <dgwake...@gmail.com> wrote: > Jasmin, > > Did you follow the instructions from the wiki: > > https://surfer.nmr.mgh.harvard.edu/fswiki/QuickInstall > which links to this mac specific page. > https://surfer.nmr.mgh.harvard.edu/fswiki/MacOsInstall > > ? > > hth > d > > On Thu, Jan 14, 2016 at 5:10 PM, Jasmin Alves <jal...@usc.edu> wrote: > > Jasmins-MacBook-Pro:freesurfer jasminalves$ ls -l > > $FREESURFER_HOME/bin/tksurfer > > > > -rwxr-xr-x 1 root wheel 103 May 14 2013 > > /Applications/freesurfer/bin/tksurfer > > > > > > Jasmins-MacBook-Pro:freesurfer jasminalves$ $> freeview -v > > $SUBJECTS_DIR/bert/mri/brainmask.mgz -v > > $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f > > $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f > > $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f > > $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f > > $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red > > > > -bash: freeview: Permission denied > > > > > > On Thu, Jan 14, 2016 at 2:04 PM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> > > wrote: > >> > >> Jasmin, can you just cut and paste it into the email? > >> > >> On 01/14/2016 04:59 PM, Jasmin Alves wrote: > >> > Here is the output to the ls command > >> > > >> > On Thu, Jan 14, 2016 at 1:55 PM, Jasmin Alves <jal...@usc.edu > >> > <mailto:jal...@usc.edu>> wrote: > >> > > >> > Hi Dr. Greve, > >> > > >> > I am still receiving the same message that I am denied access to > >> > freeview. Is there anything I can do? > >> > > >> > Thanks, > >> > Jasmin > >> > > >> > On Thu, Jan 14, 2016 at 1:22 PM, Douglas N Greve > >> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> > >> > wrote: > >> > > >> > Hi Jasmin, do you have permission to execute FS commands? What > >> > is the > >> > result of > >> > ls -l $FREESURFER_HOME/bin/tksurfer > >> > > >> > > >> > > >> > On 01/14/2016 04:16 PM, Jasmin Alves wrote: > >> > > Hello, > >> > > > >> > > I recently downloaded freesurfer on my mac with a Yosemite > >> > operating > >> > > system. The application itself appears to work, however I am > >> > not able > >> > > to use the command line to do any of the testing free surfer > >> > commands, > >> > > as I keep getting a access denied. I have attached a > >> > screenshot. Your > >> > > help would be very useful. > >> > > > >> > > Thank you, > >> > > Jasmin > >> > > > >> > > -- > >> > > Jasmin Alves > >> > > Predoctoral Student > >> > > Medical Biology Graduate Program > >> > > University of Southern California > >> > > jal...@usc.edu <mailto:jal...@usc.edu> > >> > <mailto:jal...@usc.edu <mailto:jal...@usc.edu>> > >> > > > >> > > > >> > > > >> > > _______________________________________________ > >> > > Freesurfer mailing list > >> > > Freesurfer@nmr.mgh.harvard.edu > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > >> > -- > >> > Douglas N. Greve, Ph.D. > >> > MGH-NMR Center > >> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > >> > Phone Number: 617-724-2358 <tel:617-724-2358> > >> > Fax: 617-726-7422 <tel:617-726-7422> > >> > > >> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > >> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > >> > Outgoing: > >> > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > > >> > > >> > The information in this e-mail is intended only for the person > >> > to whom it is > >> > addressed. If you believe this e-mail was sent to you in error > >> > and the e-mail > >> > contains patient information, please contact the Partners > >> > Compliance HelpLine at > >> > http://www.partners.org/complianceline . If the e-mail was > >> > sent to you in error > >> > but does not contain patient information, please contact the > >> > sender and properly > >> > dispose of the e-mail. > >> > > >> > > >> > > >> > > >> > -- > >> > Jasmin Alves > >> > Predoctoral Student > >> > Medical Biology Graduate Program > >> > University of Southern California > >> > jal...@usc.edu <mailto:jal...@usc.edu> > >> > > >> > > >> > > >> > > >> > -- > >> > Jasmin Alves > >> > Predoctoral Student > >> > Medical Biology Graduate Program > >> > University of Southern California > >> > jal...@usc.edu <mailto:jal...@usc.edu> > >> > > >> > > >> > > >> > _______________________________________________ > >> > Freesurfer mailing list > >> > Freesurfer@nmr.mgh.harvard.edu > >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> gr...@nmr.mgh.harvard.edu > >> Phone Number: 617-724-2358 > >> Fax: 617-726-7422 > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > -- > > Jasmin Alves > > Predoctoral Student > > Medical Biology Graduate Program > > University of Southern California > > jal...@usc.edu > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jal...@usc.edu
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
