Hi emad, I think if you change format type of images to nifti it will work as allright. I had a problem like this and it worked for me... On Dec 24, 2015 8:30 PM, <freesurfer-requ...@nmr.mgh.harvard.edu> wrote:
> Send Freesurfer mailing list submissions to > freesurfer@nmr.mgh.harvard.edu > > To subscribe or unsubscribe via the World Wide Web, visit > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > or, via email, send a message with subject or body 'help' to > freesurfer-requ...@nmr.mgh.harvard.edu > > You can reach the person managing the list at > freesurfer-ow...@nmr.mgh.harvard.edu > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Freesurfer digest..." > > > Today's Topics: > > 1. Recon-all error (Emad Ahmadi) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 24 Dec 2015 09:50:52 -0500 > From: Emad Ahmadi <e...@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Recon-all error > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Message-ID: <b3495f09-e1e9-4057-b839-c407b2182...@nmr.mgh.harvard.edu> > Content-Type: text/plain; charset="utf-8" > > Hi, > > I ran recon-all on the dicoms of a subject, obtained at Bay 4, and I > received the following error: > > mris_calc -o lh.area.mid lh.area add lh.area.pial > dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > Trace/BPT trap > Wed Dec 23 21:59:54 EST 2015 > ERROR: vertexvol > mris_calc -o lh.area.mid lh.area add lh.area.pial > Darwin MGH000844.local 15.2.0 Darwin Kernel Version 15.2.0: Fri Nov 13 > 19:56:56 PST 2015; root:xnu-3248.20.55~2/RELEASE_X86_64 x86_64 > > recon-all -s 3Lt_002 exited with ERRORS at Wed Dec 23 21:59:54 EST 2015 > > For more details, see the log file > /Users/Emad/Projects/3LT/subjDir/3Lt_002/scripts/recon-all.log > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > I have attached the log file. I?d truly appreciate your help. > > Thank you, and with best wishes for a wonderful holiday season for > everyone, > Emad > > > Emad Ahmadi, MD > ----------------------------------------------- > Research Fellow in Radiology > Massachusetts General Hospital > Harvard Medical School > > 25 New Chardon Street, Suite 400 > Boston, MA 02114 > Tel: 617 726 5237 > Email: e...@nmr.mgh.harvard.edu > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20151224/f523716e/attachment-0003.html > -------------- next part -------------- > A non-text attachment was scrubbed... > Name: recon-all.error > Type: application/octet-stream > Size: 461 bytes > Desc: not available > Url : > http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20151224/f523716e/attachment-0002.obj > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20151224/f523716e/attachment-0004.html > -------------- next part -------------- > A non-text attachment was scrubbed... > Name: recon-all.log > Type: application/octet-stream > Size: 242261 bytes > Desc: not available > Url : > http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20151224/f523716e/attachment-0003.obj > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20151224/f523716e/attachment-0005.html > > ------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > End of Freesurfer Digest, Vol 142, Issue 43 > ******************************************* > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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