Do I have to run recon-all entirely in order to extract volume for a few Brodmann's areas? Or is there a way of optimizing the process by striping it of any unneeded calculations?
It is taking 21h to analyze one subject. Best, luis 2015-12-22 9:44 GMT+11:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > If you're doing anatomical analysis, then FSFAST is not needed (nor its > directly structure). If you have an input anatomical volume in any > format, then just run > > recon-all -s yoursubjectname -all -i inputfile > > inputfile can include img but be warned that img does not have > information about head orientation. This may cause a catastrophic > failure (eg, the head is upside down). If the head is left-right > reversed, then it probably won't fail but everything will be left-right > reversed. don't say I did not warn you:) > > > On 12/21/2015 05:37 PM, Luis Fernado Silva Castro de Araújo wrote: > > > > Dear Douglas, > > > > It's an anatomical analysis. Perhaps I misunderstood the requirement > > for setting up the directories in the FSFAST for the recon-all command. > > > > If that is the case, it is then a matter of converting my img files > > into mgz and run recon-all on them, am I right? > > > > Does the command recon-all also gives me volumes for specific > > Brodmann's areas? Or do I have to run a labeling to that? > > > > > > Thank you, > > > > luis > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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