If you're doing anatomical analysis, then FSFAST is not needed (nor its directly structure). If you have an input anatomical volume in any format, then just run
recon-all -s yoursubjectname -all -i inputfile inputfile can include img but be warned that img does not have information about head orientation. This may cause a catastrophic failure (eg, the head is upside down). If the head is left-right reversed, then it probably won't fail but everything will be left-right reversed. don't say I did not warn you:) On 12/21/2015 05:37 PM, Luis Fernado Silva Castro de Araújo wrote: > > Dear Douglas, > > It's an anatomical analysis. Perhaps I misunderstood the requirement > for setting up the directories in the FSFAST for the recon-all command. > > If that is the case, it is then a matter of converting my img files > into mgz and run recon-all on them, am I right? > > Does the command recon-all also gives me volumes for specific > Brodmann's areas? Or do I have to run a labeling to that? > > > Thank you, > > luis > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
