you can use mri_surf2vol

cheers
Bruce
On Thu, 29 Oct 2015, std...@virgilio.it wrote:

> Thank you very much,
> How can I export a conjunction maps from surf to volume?
> I need to make it to perform the DCM analysis by SPM.
>
>
> Stefano
>
>
>> ----Messaggio originale----
>> Da: fis...@nmr.mgh.harvard.edu
>> Data: 27-ott-2015 13.21
>> A: <std...@virgilio.it>, "Freesurfer support list"<freesur...@nmr.mgh.
> harvard.edu>
>> Ogg: Re: [Freesurfer] R: Re:  R: import FS-FAST results in FSL
>>
>> Hi Stefano
>>
>> mri_vol2surf samples the volume onto the surface and saves it as a
> 1D
>> list of values, one per surface vertex. You can't view that in
> fslview
>> AFAIK - you need to load a surface in freeview/tksurfer and visualize
> it
>> as an overlay on the surface.
>>
>> cheers
>> Bruce
>> On Tue, 27 Oct 2015, std...@virgilio.it wrote:
>>
>>> Yes I would like to open with fslview (FSL) the sig.nii.gz of each
>>> subject which is computed by seed-based analysis by FS-FAST.
>>> I have mask the sig.nii.gz by fslmaths -div
>>> I have run:
>>> mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg
>>> subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz
>>>
>>> but when I open the prova.nii.gz with fslview the windows is empty
>>> with a line.
>>>
>>> Thanks
>>>
>>>
>>> Stefano
>>>
>>>> ----Messaggio originale----
>>>> Da: gr...@nmr.mgh.harvard.edu
>>>> Data: 29-set-2015 22.09
>>>> A: <freesurfer@nmr.mgh.harvard.edu>
>>>> Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL
>>>>
>>>> Do you mean surface-based analysis? You'd have to put them back
> into
>>> the
>>>> volume using mri_surf2vol, write them out as nifti and then run
>>> fslview
>>>> on them
>>>>
>>>> On 09/29/2015 11:17 AM, std...@virgilio.it wrote:
>>>>>
>>>>>     Hi list,
>>>>>
>>>>>     I would like to import FS-FAST results (conjunction maps) in
>>> FSL,
>>>>>     opening them by fslview.
>>>>>     Could you provide me any suggestion?
>>>>>
>>>>>     Thank you very much
>>>>>     Best regards,
>>>>>
>>>>>
>>>>>     Stefano
>>>>>
>>>>>
>>>>>
>>>>>
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>>>>
>>>> --
>>>> Douglas N. Greve, Ph.D.
>>>> MGH-NMR Center
>>>> gr...@nmr.mgh.harvard.edu
>>>> Phone Number: 617-724-2358
>>>> Fax: 617-726-7422
>>>>
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>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.
>>> edu/transfer/outgoing/flat/greve/
>>>>
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