you can use mri_surf2vol cheers Bruce On Thu, 29 Oct 2015, std...@virgilio.it wrote:
> Thank you very much, > How can I export a conjunction maps from surf to volume? > I need to make it to perform the DCM analysis by SPM. > > > Stefano > > >> ----Messaggio originale---- >> Da: fis...@nmr.mgh.harvard.edu >> Data: 27-ott-2015 13.21 >> A: <std...@virgilio.it>, "Freesurfer support list"<freesur...@nmr.mgh. > harvard.edu> >> Ogg: Re: [Freesurfer] R: Re: R: import FS-FAST results in FSL >> >> Hi Stefano >> >> mri_vol2surf samples the volume onto the surface and saves it as a > 1D >> list of values, one per surface vertex. You can't view that in > fslview >> AFAIK - you need to load a surface in freeview/tksurfer and visualize > it >> as an overlay on the surface. >> >> cheers >> Bruce >> On Tue, 27 Oct 2015, std...@virgilio.it wrote: >> >>> Yes I would like to open with fslview (FSL) the sig.nii.gz of each >>> subject which is computed by seed-based analysis by FS-FAST. >>> I have mask the sig.nii.gz by fslmaths -div >>> I have run: >>> mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg >>> subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz >>> >>> but when I open the prova.nii.gz with fslview the windows is empty >>> with a line. >>> >>> Thanks >>> >>> >>> Stefano >>> >>>> ----Messaggio originale---- >>>> Da: gr...@nmr.mgh.harvard.edu >>>> Data: 29-set-2015 22.09 >>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>> Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL >>>> >>>> Do you mean surface-based analysis? You'd have to put them back > into >>> the >>>> volume using mri_surf2vol, write them out as nifti and then run >>> fslview >>>> on them >>>> >>>> On 09/29/2015 11:17 AM, std...@virgilio.it wrote: >>>>> >>>>> Hi list, >>>>> >>>>> I would like to import FS-FAST results (conjunction maps) in >>> FSL, >>>>> opening them by fslview. >>>>> Could you provide me any suggestion? >>>>> >>>>> Thank you very much >>>>> Best regards, >>>>> >>>>> >>>>> Stefano >>>>> >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> -- >>>> Douglas N. Greve, Ph.D. >>>> MGH-NMR Center >>>> gr...@nmr.mgh.harvard.edu >>>> Phone Number: 617-724-2358 >>>> Fax: 617-726-7422 >>>> >>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>> edu/transfer/outgoing/flat/greve/ >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>>> contains patient information, please contact the Partners > Compliance >>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>> you in error >>>> but does not contain patient information, please contact the > sender >>> and properly >>>> dispose of the e-mail. >>>> >>>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer