Thank you very much, How can I export a conjunction maps from surf to volume? I need to make it to perform the DCM analysis by SPM.
Stefano >----Messaggio originale---- >Da: fis...@nmr.mgh.harvard.edu >Data: 27-ott-2015 13.21 >A: <std...@virgilio.it>, "Freesurfer support list"<freesur...@nmr.mgh. harvard.edu> >Ogg: Re: [Freesurfer] R: Re: R: import FS-FAST results in FSL > >Hi Stefano > >mri_vol2surf samples the volume onto the surface and saves it as a 1D >list of values, one per surface vertex. You can't view that in fslview >AFAIK - you need to load a surface in freeview/tksurfer and visualize it >as an overlay on the surface. > >cheers >Bruce >On Tue, 27 Oct 2015, std...@virgilio.it wrote: > >> Yes I would like to open with fslview (FSL) the sig.nii.gz of each >> subject which is computed by seed-based analysis by FS-FAST. >> I have mask the sig.nii.gz by fslmaths -div >> I have run: >> mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg >> subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz >> >> but when I open the prova.nii.gz with fslview the windows is empty >> with a line. >> >> Thanks >> >> >> Stefano >> >>> ----Messaggio originale---- >>> Da: gr...@nmr.mgh.harvard.edu >>> Data: 29-set-2015 22.09 >>> A: <freesurfer@nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL >>> >>> Do you mean surface-based analysis? You'd have to put them back into >> the >>> volume using mri_surf2vol, write them out as nifti and then run >> fslview >>> on them >>> >>> On 09/29/2015 11:17 AM, std...@virgilio.it wrote: >>>> >>>> Hi list, >>>> >>>> I would like to import FS-FAST results (conjunction maps) in >> FSL, >>>> opening them by fslview. >>>> Could you provide me any suggestion? >>>> >>>> Thank you very much >>>> Best regards, >>>> >>>> >>>> Stefano >>>> >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard. >> edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to >> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >>> contains patient information, please contact the Partners Compliance >> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >>> but does not contain patient information, please contact the sender >> and properly >>> dispose of the e-mail. >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
