Hi list,
I'm using FS-FAST. For a subject I have the error reported below after
fcseed-sess -s subj -cfg vcsf.config.The segmentation of the structural image
is fine.
$Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
cwd /Applications/freesurfer/subjects/fMRI
cmdline mri_glmfit --y
/Applications/freesurfer/subjects/fMRI/subj/rest/001/fmcpr.nii.gz --mask
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/mask.nii.gz
--qa --glmdir
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/glm
--pca --no-est-fwhm
sysname Darwin
hostname iMac-di-Stefano.local
machine x86_64
user Stefano
FixVertexAreaFlag = 1
UseMaskWithSmoothing 1
OneSampleGroupMean 0
y /Applications/freesurfer/subjects/fMRI/subj/rest/001/fmcpr.nii.gz
logyflag 0
usedti 0
mask
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/mask.nii.gz
maskinv 0
glmdir
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/glm
IllCondOK 0
ReScaleX 1
DoFFx 0
Creating output directory
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/glm
Loading y from /Applications/freesurfer/subjects/fMRI/subj/rest/001/fmcpr.nii.gz
Saving design matrix to
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/glm/Xg.dat
Normalized matrix condition is 61.5872
Matrix condition is 1e+08
Pruning voxels by thr: 0.000000
Found 0 voxels in mask
Saving mask to
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.44153/glm/mask.mgh
search space = 0.000000
DOF = 297
Starting fit and test
Fit completed in 0.00075 minutes
Computing temporal AR1
Writing results
Computing FSNR
mean
maxvox sig=0 F=0 at index 0 0 0 seed=1446346479
linear
maxvox sig=0 F=0 at index 0 0 0 seed=1446346479
quad
maxvox sig=0 F=0 at index 0 0 0 seed=1446346479
Computing PCA (300)
ERROR: no voxels in mask_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
