Hi Octavian
you can read the surface into matlab with read_surf.m, but I think you
will need to transform the x,y,z coords of every vertex
cheers
Bruce
On Wed, 28 Oct 2015,
Octavian Lie wrote:
Dear All,
I ran recon-all and generated a brain.mgz and say, lh.pial.
I converted brain.mgz to brain.nii, imported the latter to matlab/spm and
realigned it to rbrain.nii, generating a transform matrix
M=rbrain.reorient.mat.
if MM is the header for rbrain.nii, the header O for the original brain.nii
can be calculated with
O=inv(M) *MM.
How do I reorient the lh.pial to the rbrain.nii? I suppose I need a reader
for the pial header in matlab.
Many thanks,
Octavian
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
