Dear All, I ran recon-all and generated a brain.mgz and say, lh.pial. I converted brain.mgz to brain.nii, imported the latter to matlab/spm and realigned it to rbrain.nii, generating a transform matrix M=rbrain.reorient.mat. if MM is the header for rbrain.nii, the header O for the original brain.nii can be calculated with O=inv(M) *MM.
How do I reorient the lh.pial to the rbrain.nii? I suppose I need a reader for the pial header in matlab. Many thanks, Octavian
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