Dear Anastasia, Thank you very much for the quick help.
Best wishes, Barbara Anne On 25/08/2015 22:10, Anastasia Yendiki wrote: > Hi Barbara - Yes, just correct with the method of your choice, apply the > rotation to the gradient vectors, pass the corrected images and gradient > vectors to tracula, and turn off the default eddy correction (then it > won't rotate anything, either). I'll probably make it an option in the > upcoming version to use eddy. > > Best, > a.y > > On Tue, 25 Aug 2015, Barbara Kreilkamp wrote: > >> Dear TRACULA experts and developers, >> >> I am wondering whether TRACULA will allow usage of eddy, the newer >> eddy-correction tool from FSL in a newer version? >> >> Alternatively, it seems it would be possible to use the eddy corrected >> nifti plus bvec and bval as the original input to TRACULA and turn off >> eddy-correct and the b-vector rotation. >> >> Please let me know if this would be a valid approach. >> >> Thank you very much, >> Best wishes, >> Barbara Anne >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
