Hi Barbara - Yes, just correct with the method of your choice, apply the rotation to the gradient vectors, pass the corrected images and gradient vectors to tracula, and turn off the default eddy correction (then it won't rotate anything, either). I'll probably make it an option in the upcoming version to use eddy.
Best, a.y On Tue, 25 Aug 2015, Barbara Kreilkamp wrote: > Dear TRACULA experts and developers, > > I am wondering whether TRACULA will allow usage of eddy, the newer > eddy-correction tool from FSL in a newer version? > > Alternatively, it seems it would be possible to use the eddy corrected > nifti plus bvec and bval as the original input to TRACULA and turn off > eddy-correct and the b-vector rotation. > > Please let me know if this would be a valid approach. > > Thank you very much, > Best wishes, > Barbara Anne > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
